Journal: PLOS One
Article Title: Proteomic profiling of small extracellular vesicles from bovine nucleus pulposus cells
doi: 10.1371/journal.pone.0324179
Figure Lengend Snippet: A) STRING network of 484 NP small EV proteins; B) Cluster 1: Extracellular vesicle biogenesis (red), multivesicular body sorting pathway (blue), ESCRT I complex (pink), ESCRT (green), Flotillin complex (yellow); C) Cluster 2: Detection of oxidative stress (black), pentose phosphate pathway (red), glycolysis/gluconeogenesis (blue), biosynthesis of amino acids (green), carbon metabolism (pink), pyruvate metabolism (dark green), TCA cycle (yellow), glutathione metabolism (sky blue), HIF1 signaling pathway (purple), amino sugar and nucleotide sugar metabolism (ochre yellow), activation of BAD and translocation to mitochondria (brown), regulation of localization of FOXO transcription factors (grey); D) Cluster 3: Regulation of Schwann cell migration (blue), G-protein coupled receptor signaling pathway (green), axon guidance (red); E) Cluster 4: Rac protein signal transduction (red), RAS protein signal transduction (blue), small GTPase mediated signal transduction (green), RAP1 signaling pathway (yellow), EPHB-mediated forward signaling (pink), VEGFA/VEGFR2 pathway (dark green), signaling by Rho GTPases (sky blue); F); Cluster 5: MAP2K and MAPK activation (red), RAS signaling pathway (green), MAPK signaling pathway (pink), PI3K/AKT signaling pathway (yellow); G) Cluster 6 version 1: Cell adhesion mediated by integrin (red), mesodermal cell differentiation (blue), angiogenesis (green), regulation of small GTPase mediated signal transduction (yellow), negative regulation of apoptotic process (pink); H) Cluster 6 version 2: ECM receptor interaction (red), focal adhesion (green), PI3K/AKT signaling pathway (blue), axon guidance (yellow), TGFβ signaling pathway (pink); I) Cluster 7: Positive regulation of lamellipodium assembly (blue), actin cytoskeleton organization (red), EPHB mediated forward signaling (green); J) Cluster 8: ECM assembly (pink), cartilage development (green), angiogenesis (blue), blood vessel development (red), cell adhesion (yellow), PI3K/AKT signaling pathway (dark green). ECM: Extracellular matrix; ESCRT I: Endosomal sorting complex required for transport I; STRING: Search tool for the retrieval of interacting genes/proteins; NP: Nucleus pulposus.
Article Snippet: Environmental Information Processing , Regulation of actin cytoskeleton Focal adhesion Rap1 signaling pathway ECM-receptor interaction PI3K-Akt signaling pathway Chemokine signaling pathway Apelin signaling pathway Sphingolipid signaling pathway Ras signaling pathway cAMP signaling pathway MAPK signaling pathway , bta04810 bta04510 bta04015 bta04512 bta04151 bta04062 bta04371 bta04071 bta04014 bta04024 bta04010 , ACTN1, C9, COL6A1, COL6A3, FLNA, FN1, GNAI1, GNAI2, GNAI3, GNAQ, GNB1, GSN, HSPA8, HSPB1, HSPG2, ITGA3, ITGAV, ITGB1, LAMC1, MSN, MYH9, PFN1, RAB5B, RAB5C, RAC1, RHOA, RRAS, RRAS2, RAP1B, TLN1, YWHAQ, YWHAE, YWHAG, YWHAZ.
Techniques: Activation Assay, Translocation Assay, Migration, Transduction, Cell Differentiation